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Fusion v2.4.17

How to pin this version​

fusion {
  enabled = true
  containerConfigUrl = 'https://fusionfs.seqera.io/releases/v2.4.17-amd64.json'
}
info

For ARM64 CPU architecture, use containerConfigUrl = 'https://fusionfs.seqera.io/releases/v2.4.17-arm64.json'.

Bug fixes​

General​

  • Fixed lock with symlink compaction.

Seqera Cloud v25.3.0_cycle29

Feature updates and improvements​

Datasets​

  • Added support for date-only formats in search queries, allowing you to search using simple dates (e.g., 2025-02-02) instead of full ISO-8601 datetime strings.

Pipelines​

  • Added pipeline version numbers and descriptions to preconfigured onboarding pipelines, making it easier to understand what each pipeline does.

Bug fixes​

Data Explorer​

  • Fixed an issue where filtering for Azure credentials in Data Explorer only returned one credential type instead of all three available Azure credential types.
  • Fixed an issue where the Data Explorer link did not appear in Task View when configuring multiple AWS credentials with similar permissions in the workspace.

Compute environments​

  • Fixed an issue where Seqera Compute environments did not apply proper EC2 instance type constraints, ensuring consistent compute environment behavior and preventing instance unavailability issues.

Launchpad​

  • Fixed an issue where users could dismiss critical notifications about compute environment substitutions when relaunching pipelines, ensuring important status messages remain visible throughout the workflow.

Fusion v2.4.16

How to pin this version​

fusion {
  enabled = true
  containerConfigUrl = 'https://fusionfs.seqera.io/releases/v2.4.16-amd64.json'
}
info

For ARM64 CPU architecture, use containerConfigUrl = 'https://fusionfs.seqera.io/releases/v2.4.16-arm64.json'.

Feature updates and improvements​

Snapshots​

  • Added Google Batch (GCP) support for snapshots.

Fusion v2.5.5

How to pin this version​

fusion {
  enabled = true
  containerConfigUrl = 'https://fusionfs.seqera.io/releases/v2.5.5-amd64.json'
}
info

For ARM64 CPU architecture, use containerConfigUrl = 'https://fusionfs.seqera.io/releases/v2.5.5-arm64.json'.

Feature updates and improvements​

Release v2.5.5 with GCP snapshot support, critical race condition fixes, dependency updates, and improved reliability.

Snapshots​

  • GCP Snapshot support: Add Google Batch (GCP) support for snapshots with comprehensive compute environment detection and metadata client integration.
  • Snapshot version: Bump fusion-snapshot to v1.7.0 with GCP support.

Configuration​

  • Locking documentation: Add comprehensive lock documentation to entryService including invariants, lock upgrade patterns, and TOCTOU prevention.
  • Preemption handling: Improve logging and handling of instance reclamation/spot termination events.
  • Nextflow pinning: Pin Nextflow to 25.04.8 in CI to work around AWS authentication issues in 25.10.0.

Dependencies​

  • Bumped AWS SDK v2 components (1.19.11 → 1.19.13, 1.88.3 → 1.88.5, etc.)
  • Bumped Azure SDK for Go (1.6.2 → 1.6.3, azidentity 1.12.0 → 1.13.0)
  • Bumped Google APIs (0.251.0 → 0.252.0)
  • Bumped golang.org/x/sys (0.36.0 → 0.37.0)
  • Bumped failsafe-go (0.9.0 → 0.9.1)

Critical fixes​

General​

  • Race Condition Fixes:
    • Resolve multiple race conditions in entry service operations.
    • Fix directory iteration race by consolidating lock scope.
    • Add lock condition re-evaluation after write lock acquisition to prevent TOCTOU issues.
  • Priority test reliability: Improve TestBandwidthExecutor/PriorityExecution statistical reliability by increasing buffer and task counts.
  • Directory operations: Ensure rmdir() properly fails on non-empty directories.
  • License tests: Update test certificates to expire in 40 years (2065) to prevent test failures.

MultiQC v1.32

The MultiQC v1.32 release features one major change:

  • Bootstrap upgrade and DARK MODE (#3264)

This has been brewing for a long time, and is a large rewrite of how MultiQC HTML / CSS and JS is written and packaged.

MultiQC now supports simple theming with Bootstrap color modes, and the updated default template ships with both light- and dark-mode by default 😎.

The old template is still available, but has been renamed to original.

Nextflow 25.10.0

Feature updates and improvements​

Language features​

  • Added type checking utils by @bentsherman in #6482

Google Batch​

  • Prioritized Google Batch API exit codes with fallback to .exitcode file by @jorgee in #6498

S3​

  • Simplified S3 configuration options by @bentsherman in #6496

General​

  • Added publish-artifacts step to release process by @pditommaso in 75d8ebf
  • Showed workspace roles in 'auth status', tweaked error message on 403 by @ewels in #6497
  • Tracked remote input files in lineage by @jorgee in #6490

Dependencies​

  • Bumped nf-amazon@3.4.1 by @pditommaso in 0d5ced9
  • Bumped nf-google@1.23.3 by @pditommaso in e6c7652
  • Bumped nf-tower@1.17.1 by @pditommaso in 2069c97

Bug fixes​

AWS Batch​

  • Fixed no secrets in AWS Batch jobs by @jorgee in #6499

Full changelog: https://github.com/nextflow-io/nextflow/releases/tag/v25.10.0

Nextflow 25.09.2-edge

Feature updates and improvements​

Language features​

  • Brought workflow outputs out of preview by @bentsherman in #6487
  • Typed processes by @bentsherman in #6368

Kubernetes​

  • Added .command.log redirection in K8s container command by @jorgee in #6455

S3​

  • Limited S3 client connections when using virtual threads by @jorgee in #6369

Plugins​

  • Improved plugin create confirmation prompt by @robsyme in #6473

Configuration​

  • Renamed config.schema package to config.spec by @bentsherman in #6485

General​

  • Added nextflow auth command for Seqera Platform authentication by @pditommaso in #6463
  • Added nextflow launch command by @jorgee in #6491
  • Improved release script validation by @pditommaso in 3e3a938
  • Migrated SraExplorer to use HxClient for HTTP operations by @pditommaso in #6467
  • Updated buildInfo on releaseInfo by @pditommaso in 46a8a2b

Bug fixes​

Language features​

  • Fixed false error with storeDir and val outputs by @bentsherman in #6408

Configuration​

  • Fixed e2e test infrastructure and added config.schema compatibility aliases by @pditommaso in #6495
  • Fixed false error for executor.jobName config option by @bentsherman in #6375

Plugins​

  • Fixed type casting in PluginSpec for ConfigScope by @pditommaso in #6469

Full changelog: https://github.com/nextflow-io/nextflow/releases/tag/v25.09.2-edge

Seqera Cloud v25.3.0_cycle28

Feature updates and improvements​

Compute environments​

  • Updated documentation on free credit entitlement and management.
  • Updated the default Seqera AMI version to 0.0.10 for both AMD64 and ARM64 architectures in AWS Cloud deployments.

UI/UX​

  • Added a copy button to data display chips, allowing you to quickly copy displayed values to your clipboard.
  • Added an improved onboarding flow for Seqera Compute customers to quickly run pipelines.

Pipelines​

  • Added support for pinning the HEAD commit ID of the chosen revision to guarantee deterministic pipeline execution.

Data Explorer​

  • Added support for image preview and file upload in Data Explorer when using Amazon S3-compatible API storage (for example, but not limited to, Cloudflare R2, MinIO, and Oracle Cloud).
  • Added support for MinIO object storage in Data Explorer, enabling users to browse, upload, and download files from MinIO instances using S3-compatible credentials.

Workflows​

  • Added the ability to read task logs on Azure Cloud from Azure Blob Storage after pipeline completion, ensuring logs remain accessible throughout the entire task lifecycle.
  • Updated the nf-launcher container versions from 25.04.6 to 25.04.8 for both standard and Docker-in-Docker variants.

Bug fixes​

Pipelines​

  • Fixed an issue where resuming pipelines failed due to incorrect identification of launchable entity types.
  • Fixed issues where version name autogeneration used incorrect defaults and navigation returned users to the wrong page when editing pipeline versions.

Studios​

  • Fixed an issue where users with Launch permissions could not access Studios due to insufficient workspace settings permissions.

General​

  • Fixed an issue where administrators could accidentally create duplicate user accounts due to differences in email address casing.